Code coverage tests

This page documents the degree to which the PARI/GP source code is tested by our public test suite, distributed with the source distribution in directory src/test/. This is measured by the gcov utility; we then process gcov output using the lcov frond-end.

We test a few variants depending on Configure flags on the pari.math.u-bordeaux.fr machine (x86_64 architecture), and agregate them in the final report:

The target is to exceed 90% coverage for all mathematical modules (given that branches depending on DEBUGLEVEL or DEBUGMEM are not covered). This script is run to produce the results below.

LCOV - code coverage report
Current view: top level - basemath - hyperellperiods.c (source / functions) Hit Total Coverage
Test: PARI/GP v2.18.1 lcov report (development 30759-17b423fb9b) Lines: 277 301 92.0 %
Date: 2026-03-21 09:26:11 Functions: 30 31 96.8 %
Legend: Lines: hit not hit

          Line data    Source code
       1             : /* Copyright (C) 2000  The PARI group.
       2             : 
       3             : This file is part of the PARI/GP package.
       4             : 
       5             : PARI/GP is free software; you can redistribute it and/or modify it under the
       6             : terms of the GNU General Public License as published by the Free Software
       7             : Foundation. It is distributed in the hope that it will be useful, but WITHOUT
       8             : ANY WARRANTY WHATSOEVER.
       9             : 
      10             : Check the License for details. You should have received a copy of it, along
      11             : with the package; see the file 'COPYING'. If not, write to the Free Software
      12             : Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. */
      13             : #include "pari.h"
      14             : #include "paripriv.h"
      15             : 
      16             : /*********************************************************************/
      17             : /**                                                                 **/
      18             : /**                PERIODS OF HYPERELLIPTIC CURVES                  **/
      19             : /**               contributed by Pascal Molin (2019)                **/
      20             : /**                                                                 **/
      21             : /*********************************************************************/
      22             : 
      23             : /*********************************************************************/
      24             : /*                                                                   */
      25             : /*                 Symplectic pairing and basis                      */
      26             : /*                                                                   */
      27             : /*********************************************************************/
      28             : 
      29             : /* compute symplectic homology basis */
      30             : 
      31             : /* exchange rows i,j, in place */
      32             : static void
      33         357 : row_swap(GEN M, long i, long j)
      34             : {
      35         357 :   long k, l = lg(M);
      36        1785 :   for (k = 1; k < l; k++) swap(gcoeff(M,i,k), gcoeff(M,j,k));
      37         357 : }
      38             : 
      39             : static void
      40         357 : swap_step(GEN P, GEN M, long i, long j)
      41             : {
      42         357 :   if (i == j) return;
      43         357 :   swap(gel(P,i), gel(P,j));
      44         357 :   swap(gel(M,i), gel(M,j));
      45         357 :   row_swap(M, i, j);
      46             : }
      47             : 
      48             : /* M <- U(i,j, [u,v; u1,v1])~ * M. In place */
      49             : static void
      50         581 : row_bezout(GEN M, long i, long j, GEN u, GEN v, GEN u1, GEN v1)
      51             : {
      52         581 :   long k, l = lg(M);
      53        2905 :   for (k = 1; k < l; k++)
      54             :   {
      55        2324 :     GEN a = gcoeff(M,i,k), b = gcoeff(M,j,k);
      56        2324 :     gcoeff(M,i,k) = addii(mulii(u,a), mulii(v,b));
      57        2324 :     gcoeff(M,j,k) = addii(mulii(u1,a),mulii(v1,b));
      58             :   }
      59         581 : }
      60             : 
      61             : /* M <- M * U(i,j, [u,v; u1,v1]). In place */
      62             : static void
      63        1162 : col_bezout(GEN M, long i, long j, GEN u, GEN v, GEN u1, GEN v1)
      64             : {
      65        1162 :   GEN Mi = gel(M,i), Mj = gel(M,j);
      66        1162 :   gel(M,i) = ZC_lincomb(u,  v,  Mi, Mj);
      67        1162 :   gel(M,j) = ZC_lincomb(u1, v1, Mi, Mj);
      68        1162 : }
      69             : 
      70             : /* P <- P*U(i,j, [u,v;u1,v1]); where U[k,k] = 1 for k != i,j,
      71             :  *           U[i,i] = u, U[i,j] = v, U[j,i] = u1, U[j,j] = v1
      72             :  * M <- U~ * M * U */
      73             : static void
      74         581 : bezout_apply(GEN P, GEN M, long i, long j, GEN u, GEN v, GEN u1, GEN v1)
      75             : {
      76         581 :   col_bezout(P, i,j, u,v,u1,v1);
      77         581 :   row_bezout(M, i,j, u,v,u1,v1);
      78         581 :   col_bezout(M, i,j, u,v,u1,v1);
      79         581 : }
      80             : /* (i,j) <- (u i + v j, u1 i + v1 j)*/
      81             : static void
      82           0 : bezout_step(GEN P, GEN M, long i, long j, GEN a, GEN b)
      83             : {
      84           0 :   GEN u, v, d = bezout(a,b,&u,&v);
      85           0 :   if (!is_pm1(d)) { a = diviiexact(a, d); b = diviiexact(b, d); }
      86           0 :   bezout_apply(P,M, i,j, u,v,negi(b),a);
      87           0 : }
      88             : /* i <- i + q * j */
      89             : static void
      90         581 : transvect_step(GEN P, GEN M, long i, long j, GEN q)
      91         581 : { bezout_apply(P,M, i,j, gen_1,q,gen_0,gen_1); }
      92             : 
      93             : /* index of non-zero element in m[i,]; return 0 if none exist else index
      94             :  * of smallest element in absolute value */
      95             : static long
      96         700 : row_pivot(GEN m, long i)
      97             : {
      98         700 :   long j, jx = 0, l = lg(m);
      99         700 :   GEN x = NULL;
     100        2100 :   for (j = 1; j < l; j++)
     101             :   {
     102        2100 :     GEN z = gcoeff(m,i,j);
     103        2100 :     if (signe(z))
     104             :     {
     105         700 :       if (is_pm1(z)) return j; /* minimal */
     106           0 :       if (!x || abscmpii(x, z) > 0) { x = z; jx = j; }
     107             :     }
     108             :   }
     109           0 :   return jx;
     110             : }
     111             : 
     112             : /* M symplectic in M_2g(Z). Returns P such that P~*M*P = J_g(D), D a ZV */
     113             : static GEN
     114         350 : ZM_symplectic_reduction(GEN M, GEN *pD)
     115             : {
     116         350 :   long dim, n = lg(M)-1, g = n >> 1; /* n will decrease */
     117         350 :   GEN P = matid(n), D = zerovec(g);
     118         350 :   pari_sp av = avma;
     119             : 
     120         350 :   M = shallowcopy(M);
     121             :   /* main loop on symplectic 2-subspace */
     122        1050 :   for (dim = 0; dim < g; dim++)
     123             :   {
     124         700 :     long j, i = 2 * dim + 1;
     125         700 :     int cleared = 0;
     126             :     /* lines 0..2d-1 already cleared */
     127         700 :     while ((j = row_pivot(M, i)) == 0)
     128             :     { /* no intersection: move M[,i] to end and decrease n */
     129           0 :       swap_step(P, M, i, n);
     130           0 :       if (--n == 2*dim) goto END;
     131             :     }
     132         700 :     if (j != i+1) { swap_step(P, M, j, i+1); j = i+1; }
     133         700 :     if (signe(gcoeff(M,i,j)) < 0) swap_step(P, M, i, j);
     134             :     /* now j = i+1 and M[i,j] > 0 */
     135             : 
     136        1400 :     while (!cleared)
     137             :     { /* clear row i */
     138             :       long k;
     139        1400 :       for (k = j + 1; k <= n; k++)
     140         700 :         if (signe(gcoeff(M,i,k)))
     141             :         {
     142         273 :           GEN r, q = dvmdii(gcoeff(M,i,k), gcoeff(M,i,j), &r);
     143         273 :           if (r == gen_0)
     144         273 :             transvect_step(P, M, k, j, negi(q));
     145             :           else
     146           0 :             bezout_step(P, M, j, k, gcoeff(M,i,j), gcoeff(M,i,k));
     147             :         }
     148         700 :       cleared = 1;
     149             :       /* clear row j */
     150        1400 :       for (k = j + 1; k <= n; k++)
     151         700 :         if (signe(gcoeff(M,j,k)))
     152             :         {
     153         308 :           GEN r, q = dvmdii(gcoeff(M,j,k), gcoeff(M,i,j), &r);
     154         308 :           if (r == gen_0)
     155         308 :             transvect_step(P, M, k, i, q);
     156             :           else
     157             :           {
     158           0 :             bezout_step(P, M, i, k, gcoeff(M,j,i), gcoeff(M,j,k));
     159           0 :             cleared = 0; /* M[i,] now contains some ck.cl ! */
     160             :           }
     161             :         }
     162             :     }
     163         700 :     gel(D, dim + 1) = gcoeff(M,i,j);
     164             :   }
     165         350 : END:
     166         350 :   if (pD) *pD = D;
     167         350 :   return gc_all(av, pD ? 2: 1, &P, pD);
     168             : }
     169             : 
     170             : /* below is GP code from Pascal converted to C by Bill. */
     171             : 
     172             : static GEN
     173        8694 : make_Aprim(GEN A, long ia, long ib)
     174             : {
     175        8694 :   long i, j = 0, lA = lg(A);
     176        8694 :   GEN a = gel(A, ia), b = gel(A, ib), p = gadd(b, a), m = gsub(b, a);
     177        8694 :   GEN Aprim = cgetg(lA - 2, t_VEC);
     178       59388 :   for (i = 1; i < lA; ++i)
     179       50694 :     if (i != ia && i != ib)
     180       33306 :       gel(Aprim, ++j) = gdiv(gsub(gmulsg(2, gel(A, i)), p), m);
     181        8694 :   return Aprim;
     182             : }
     183             : 
     184             : static GEN
     185      586642 : sqrt_affinereduction(GEN Aprim, GEN z, long prec)
     186             : {
     187      586642 :   pari_sp av = avma;
     188      586642 :   GEN p = gen_1;
     189      586642 :   long i, l = lg(Aprim), s = 0;
     190     2724176 :   for (i = 1; i < l; ++i)
     191             :   {
     192     2137534 :     GEN a = gel(Aprim, i);
     193     2137534 :     if (signe(real_i(a)) > 0) { s++; a = gsub(a, z); } else a = gsub(z, a);
     194     2137534 :     p = gmul(p, gsqrt(a, prec));
     195             :   }
     196      586642 :   return gc_upto(av, gmul(p, powIs(s)));
     197             : }
     198             : 
     199             : static long
     200         805 : intersection_abbd(GEN A, long ia, long ib, long id, long prec)
     201             : {
     202         805 :   pari_sp av = avma;
     203         805 :   long k = lg(A)-1;
     204         805 :   GEN a = gel(A, ia), b = gel(A, ib), d = gel(A, id);
     205         805 :   GEN fbd = gmul(gpowgs(gsqrt(gsub(d, b), prec), k),
     206             :                  sqrt_affinereduction(make_Aprim(A, ib, id), gen_m1, prec));
     207         805 :   GEN fab = gmul(gpowgs(gsqrt(gsub(b, a), prec), k),
     208             :                  sqrt_affinereduction(make_Aprim(A, ia, ib), gen_1, prec));
     209         805 :   return gc_long(av, signe(imag_i(gdiv(fbd, fab))));
     210             : }
     211             : 
     212             : static long
     213         217 : intersection_abcb(GEN A, long ia, long ib, long ic, long prec)
     214             : {
     215         217 :   pari_sp av = avma;
     216         217 :   long k = lg(A)-1;
     217         217 :   GEN a = gel(A, ia), b = gel(A, ib), c = gel(A, ic), fab, fcb;
     218         217 :   fcb = gmul(gpowgs(gsqrt(gsub(b, c), prec), k),
     219             :              sqrt_affinereduction(make_Aprim(A, ic, ib), gen_1, prec));
     220         217 :   fab = gmul(gpowgs(gsqrt(gsub(b, a), prec), k),
     221             :              sqrt_affinereduction(make_Aprim(A, ia, ib), gen_1, prec));
     222         217 :   return gc_long(av, signe(imag_i(gdiv(fab, fcb))));
     223             : }
     224             : 
     225             : static long
     226         175 : intersection_abad(GEN A, long ia, long ib, long id, long prec)
     227             : {
     228         175 :   pari_sp av = avma;
     229         175 :   long k = lg(A)-1;
     230         175 :   GEN a = gel(A, ia), b = gel(A, ib), d = gel(A, id), fab, fad;
     231         175 :   fad = gmul(gpowgs(gsqrt(gsub(d, a), prec), k),
     232             :              sqrt_affinereduction(make_Aprim(A, ia, id), gen_m1, prec));
     233         175 :   fab = gmul(gpowgs(gsqrt(gsub(b, a), prec), k),
     234             :              sqrt_affinereduction(make_Aprim(A, ia, ib), gen_m1, prec));
     235         175 :   return gc_long(av, signe(imag_i(gdiv(fab, fad))));
     236             : }
     237             : 
     238             : /* inner intersection I[ab].I[cd] */
     239             : /* assume different end points */
     240             : static long
     241         903 : intersection_inner(GEN A, long ia, long ib, long ic, long id, long prec)
     242             : {
     243         903 :   pari_sp av = avma;
     244         903 :   GEN a = gel(A, ia), b = gel(A, ib), c = gel(A, ic), d = gel(A, id);
     245             :   GEN xp, fp, xpab, pb, xpcd, fpab, fpcd;
     246         903 :   GEN bpa = gadd(b, a), bma = gsub(b, a), dpc, dmc;
     247         903 :   GEN cprim = gdiv(gsub(gmulsg(2, c), bpa), bma);
     248         903 :   GEN dprim = gdiv(gsub(gmulsg(2, d), bpa), bma);
     249         903 :   GEN imc = imag_i(cprim), imd = imag_i(dprim);
     250             :   long k;
     251         903 :   if (signe(imc)*signe(imd) == 1) return 0;
     252             :   /* on the same side */
     253             :   /* p the intersection */
     254         469 :   xp = imag_i(gmul(gconj(cprim), gsub(dprim, cprim)));
     255         469 :   fp = gsub(imd, imc);
     256         469 :   if (gcmp(gabs(xp, prec), gabs(fp, prec)) >= 0) return 0;
     257             :   /* discard if xp not in ]-1,1[ */
     258           0 :   xpab = gdiv(xp, fp); dpc = gadd(d, c); dmc = gsub(d, c);
     259           0 :   pb = gadd(gmul(gdivgs(bma, 2), xpab), gdivgs(bpa, 2));
     260           0 :   xpcd = gdiv(gsub(gmulsg(2, pb), dpc), dmc);
     261             :   /* should be in ]-1,1[ */
     262           0 :   k = lg(A)-1;
     263           0 :   fpab = gmul(gpowgs(gsqrt(bma, prec), k),
     264             :               sqrt_affinereduction(make_Aprim(A, ia, ib), xpab, prec));
     265           0 :   fpcd = gmul(gpowgs(gsqrt(dmc, prec), k),
     266             :               sqrt_affinereduction(make_Aprim(A, ic, id), xpcd, prec));
     267           0 :   return gc_long(av, 2*signe(fp)*signe(real_i(gdiv(fpab, fpcd))));
     268             : }
     269             : 
     270             : static long
     271        2100 : intersection(GEN A, long ia, long ib, long ic, long id, long prec)
     272             : {
     273        2100 :   if (ia == ib || ic == id) return 0; /* bad entry */
     274        2100 :   if (ia == ic && ib == id) return 0; /* self intersection */
     275        2100 :   if (ia == id && ib == ic) return 0; /* self intersection */
     276        2100 :   if (ia == ic) return intersection_abad(A, ia, ib, id, prec);
     277        1925 :   if (ib == ic) return intersection_abbd(A, ia, ib, id, prec);
     278        1561 :   if (ia == id) return -intersection_abbd(A, ic, id, ib, prec);
     279        1120 :   if (ib == id) return intersection_abcb(A, ia, ib, ic, prec);
     280         903 :   return intersection_inner(A, ia, ib, ic, id, prec);
     281             : }
     282             : 
     283             : static GEN
     284         350 : intersection_spanning(GEN A, GEN tree, long prec)
     285             : {
     286         350 :   long i, j, n = lg(tree)-1;
     287         350 :   GEN res = cgetg(n+1, t_MAT);
     288        1750 :   for (i = 1; i <= n; ++i)
     289        1400 :     gel(res, i) = cgetg(n+1, t_VECSMALL);
     290        1750 :   for (i = 1; i <= n; ++i)
     291             :   {
     292        1400 :     coeff(res, i, i) = 0;
     293        3500 :     for (j = i+1; j <= n; ++j)
     294             :     {
     295        2100 :       long s = intersection(A, mael(tree, i, 1), mael(tree, i, 2),
     296        2100 :                                mael(tree, j, 1), mael(tree, j, 2), prec);
     297        2100 :       coeff(res, i, j) = s;
     298        2100 :       coeff(res, j, i) = -s;
     299             :     }
     300             :   }
     301         350 :   return zm_to_ZM(res);
     302             : }
     303             : 
     304             : static GEN
     305        1400 : int_periods_affinereduction(GEN C, GEN edge, long prec)
     306             : {
     307        1400 :   pari_sp av = avma;
     308        1400 :   long g = itos(gel(C, 1)), i1 = edge[1], i2 = edge[2];
     309        1400 :   GEN A = gel(C, 2), a = gel(A, i1), b = gel(A, i2);
     310        1400 :   GEN h = gel(C, 4), int_points = gel(C, 5);
     311             :   GEN F, geom_factor, decprim, Aprim, res;
     312        1400 :   long i, j, l = lg(int_points);
     313             : 
     314        1400 :   if (gcmp(real_i(a), real_i(b)) > 0) pari_err_BUG("hyperellperiods");
     315        1400 :   decprim = gdiv(gadd(b, a), gsub(b, a));
     316        1400 :   Aprim = make_Aprim(A, i1, i2);
     317        1400 :   res = gpowers0(decprim, g-1, ginv(sqrt_affinereduction(Aprim, gen_0, prec)));
     318      292824 :   for (i = 1; i < l; i++)
     319             :   {
     320      291424 :     GEN x  = gmael(int_points, i, 1), dx = gmael(int_points, i, 2);
     321      291424 :     GEN tp = gdiv(dx, sqrt_affinereduction(Aprim, x, prec));
     322      291424 :     GEN tm = gdiv(dx, sqrt_affinereduction(Aprim, gneg(x), prec));
     323      291424 :     GEN Tp = gpowers0(gadd(decprim,x), g-1, tp);
     324      291424 :     GEN Tm = gpowers0(gsub(decprim,x), g-1, tm);
     325      874272 :     for (j = 1; j <= g; j++)
     326      582848 :       gel(res,j) = gadd(gel(res,j), gadd(gel(Tp,j), gel(Tm,j)));
     327             :   }
     328        1400 :   geom_factor = gdivgs(gsub(b, a), 2);
     329        1400 :   F = gpowers0(geom_factor, g-1,
     330        1400 :                gdiv(mulcxI(h), gpowgs(gsqrt(geom_factor, prec), lg(Aprim)-1)));
     331        4200 :   for (j = 1; j <= g; j++) gel(res,j) = gmul(gel(res,j), gel(F,j));
     332        1400 :   settyp(res, t_COL); return gc_GEN(av, res);
     333             : }
     334             : 
     335             : static GEN
     336         350 : periods_spanning(GEN C, long prec)
     337             : {
     338         350 :   GEN tree = gel(C, 3);
     339         350 :   long k, n = lg(tree)-1;
     340         350 :   GEN res = cgetg(n+1, t_MAT);
     341        1750 :   for (k = 1; k <= n; k++)
     342        1400 :     gel(res, k) = gmul2n(int_periods_affinereduction(C, gel(tree,k), prec), 1);
     343         350 :   return res;
     344             : }
     345             : 
     346             : static GEN
     347         350 : t_opt(GEN D, GEN M1, GEN lambda, long prec)
     348             : {
     349         350 :   return gasinh(gdiv(gadd(D, glog(gmulsg(4, M1), prec)), lambda), prec);
     350             : }
     351             : 
     352             : static GEN
     353         350 : phi_bound(GEN tau, GEN lambda, long prec)
     354             : {
     355         350 :   GEN lam2 = gsqr(lambda);
     356         350 :   GEN Ytau = gsqrt(gmul(lam2, gsin(tau, prec)), prec);
     357         350 :   GEN Xtau = gdiv(gsqrt(gsub(gsqr(Ytau), gmul(lam2, gsqr(gsin(tau, prec)))), prec), gtan(tau, prec));
     358         350 :   return gadd(gdiv(gen_2, gcos(Ytau, prec)), ginv(gsinh(Xtau, prec)));
     359             : }
     360             : 
     361             : static GEN
     362         350 : h_opt(GEN D, GEN tau, GEN M2, GEN lambda, long prec)
     363             : {
     364         350 :   return gdiv(gmul(mulsr(2, mppi(prec)), tau),
     365             :               glog(gaddsg(1, gmul(gmul(gmulsg(2, M2), phi_bound(tau, lambda, prec)), gexp(D, prec))), prec));
     366             : }
     367             : 
     368             : static GEN
     369         350 : integration_parameters(GEN tau, GEN D, GEN lambda, long prec, long *pnpoints)
     370             : {
     371         350 :   GEN h = h_opt(D, tau, gen_1, lambda, prec);
     372         350 :   *pnpoints = itos(gceil(gdiv(t_opt(D, gen_2, lambda, prec), h)));
     373         350 :   return h;
     374             : }
     375             : 
     376             : static void
     377         350 : integration_points_thsh(GEN h, long npoints, GEN lambda, long prec, GEN *ph, GEN *pres)
     378             : {
     379         350 :   pari_sp av = avma;
     380             :   long k;
     381         350 :   GEN eh = gexp(h, prec), eh_inv = ginv(eh), ekh = gen_1, ekh_inv = gen_1;
     382         350 :   GEN res = cgetg(npoints+1, t_VEC);
     383       73206 :   for (k = 1; k <= npoints; ++k)
     384             :   {
     385             :     GEN sh, ch2, esh, esh_inv, chsh2_i, shsh2, thsh;
     386       72856 :     ekh = gmul(ekh, eh);
     387       72856 :     ekh_inv = gmul(ekh_inv, eh_inv);
     388       72856 :     sh = gdivgs(gsub(ekh, ekh_inv), 2);
     389       72856 :     ch2 = gadd(ekh, ekh_inv);
     390       72856 :     esh = gexp(gmul(lambda, sh), prec);
     391       72856 :     esh_inv = ginv(esh);
     392       72856 :     chsh2_i = ginv(gadd(esh, esh_inv));
     393       72856 :     shsh2 = gsub(esh, esh_inv);
     394       72856 :     thsh = gmul(shsh2, chsh2_i);
     395       72856 :     gel(res, k) = mkvec2(thsh, gmul(ch2, chsh2_i));
     396             :   }
     397         350 :   *ph = gmul(h, lambda);
     398         350 :   *pres = res;
     399         350 :  (void) gc_all(av, 2, ph, pres);
     400         350 : }
     401             : 
     402             : static GEN
     403        4900 : tau_edge(GEN A, long i, long j, GEN lambda, long prec)
     404             : {
     405        4900 :   GEN tauij = utoipos(4), Aprim = make_Aprim(A, i, j);
     406        4900 :   long l = lg(Aprim), k;
     407       23800 :   for (k = 1; k < l; ++k)
     408             :   {
     409       18900 :     GEN xItau = gasinh(gdiv(gatanh(gel(Aprim,k), prec), lambda), prec);
     410       18900 :     tauij = gmin_shallow(tauij, absr(imag_i(xItau)));
     411             :   }
     412        4900 :   return tauij;
     413             : }
     414             : 
     415             : static void
     416         350 : max_spanning(GEN A, long nedge, GEN lambda, long prec, GEN *ptree, GEN *ptaumin)
     417             : {
     418         350 :   pari_sp av = avma;
     419             :   GEN real_A, tau_v, tau_c, per, taken, tree, taumin;
     420         350 :   long z, i, j, k, n = lg(A)-1, m = (n*(n-1))>>1;
     421             : 
     422         350 :   tau_v = cgetg(m+1, t_VEC);
     423         350 :   tau_c = cgetg(m+1, t_VEC);
     424         350 :   real_A = real_i(A);
     425         350 :   z = 1;
     426        2380 :   for (i = 1; i <= n; ++i)
     427        6930 :     for (j = i+1; j <= n; ++j)
     428             :     {
     429        4900 :       gel(tau_v, z) = tau_edge(A, i, j, lambda, prec);
     430        4900 :       if (gcmp(gel(real_A, i), gel(real_A, j)) > 0)
     431        1260 :         gel(tau_c, z) = mkvecsmall2(j, i);
     432             :       else
     433        3640 :         gel(tau_c, z) = mkvecsmall2(i, j);
     434        4900 :       z++;
     435             :     }
     436         350 :   per = indexsort(tau_v);
     437         350 :   tau_v = vecpermute(tau_v, per);
     438         350 :   tau_c = vecpermute(tau_c, per);
     439         350 :   taken = zero_Flv(n);
     440         350 :   tree = cgetg(nedge+1, t_VEC);
     441         350 :   taken[mael(tau_c, m, 1)] = 1;
     442         350 :   taumin = gel(tau_v, m);
     443        1750 :   for (k = 1; k <= nedge; ++k)
     444             :   {
     445        1400 :     z = m;
     446        3955 :     while (taken[mael(tau_c, z, 1)]+taken[mael(tau_c, z, 2)] != 1) z--;
     447        1400 :     gel(tree, k) = gel(tau_c, z);
     448        1400 :     taumin = gmin_shallow(taumin, gel(tau_v, z));
     449        1400 :     taken[mael(tau_c, z, 1)] = taken[mael(tau_c, z, 2)] = 1;
     450             :   }
     451         350 :   *ptree = tree;
     452         350 :   *ptaumin = taumin;
     453         350 :   (void)gc_all(av, 2, ptaumin, ptree);
     454         350 : }
     455             : 
     456             : static long
     457         707 : hyperellgenus(GEN H)
     458         707 : { long d = degpol(H); return ((d+1)>>1)-1; }
     459             : static GEN
     460         350 : periodmat(GEN P, long prec)
     461             : {
     462         350 :   pari_sp av = avma;
     463         350 :   GEN A = roots(P, prec), hc, lambda, tree, tau, h, coh1x_homC, IntC, ABtoC;
     464         350 :   long npoints, g = hyperellgenus(P);
     465             : 
     466         350 :   lambda = Pi2n(-1, DEFAULTPREC);
     467         350 :   max_spanning(A, 2*g, lambda, DEFAULTPREC, &tree, &tau);
     468         350 :   h = integration_parameters(tau, stoi(prec), lambda, DEFAULTPREC, &npoints);
     469         350 :   h = rtor(h, prec);
     470         350 :   lambda = Pi2n(-1,prec);
     471         350 :   hc = mkvec5(stoi(g), A, tree, gen_0, gen_0);
     472         350 :   integration_points_thsh(h, npoints, lambda, prec, &gel(hc, 4), &gel(hc, 5));
     473         350 :   coh1x_homC = periods_spanning(hc, prec);
     474         350 :   IntC = intersection_spanning(A, tree, prec);
     475         350 :   ABtoC = ZM_symplectic_reduction(IntC, NULL);
     476         350 :   return gc_upto(av, gdiv(gmul(coh1x_homC, ABtoC),
     477             :                           gmul2n(gsqrt(leading_coeff(P), prec),-1)));
     478             : }
     479             : 
     480             : /* return 4P + Q^2 */
     481             : static GEN
     482           7 : check_hyperell(GEN PQ)
     483             : {
     484             :   GEN H;
     485           7 :   if (is_vec_t(typ(PQ)) && lg(PQ)==3)
     486           0 :     H = gadd(gsqr(gel(PQ, 2)), gmul2n(gel(PQ, 1), 2));
     487             :   else
     488           7 :     H = gmul2n(PQ, 2);
     489           7 :   return typ(H) == t_POL? H: NULL;
     490             : }
     491             : 
     492             : static GEN
     493         350 : genus2BSDperiod(GEN C, long prec)
     494             : {
     495         350 :   pari_sp av = avma;
     496             :   forsubset_t iter;
     497         350 :   GEN PQ, P, M, v, B = int2n(prec >> 1);
     498             :   long g;
     499         350 :   PQ = hyperellminimalmodel(C, NULL, NULL);
     500         350 :   P = gadd(gmulsg(4, gel(PQ, 1)), gsqr(gel(PQ, 2)));
     501         350 :   g = hyperellgenus(P);
     502         350 :   M = real_i(periodmat(P, prec));
     503         350 :   forsubset_init(&iter, mkvec2s(2*g,g));
     504         938 :   while ((v = forsubset_next(&iter)))
     505             :   {
     506         938 :     GEN Om = vecpermute(M, v), Dm = det(Om);
     507         938 :     if (expo(Dm) > -(prec>>1))
     508             :     {
     509         350 :       GEN r, d, Omr = bestappr(gmul(ginv(Om), M), B);
     510         350 :       Omr = Q_remove_denom(Omr, &d);
     511         350 :       r = gmul(Dm, ZM_det_triangular(ZM_hnf(Omr)));
     512         350 :       if (d) r = gdiv(r, gsqr(d));
     513         350 :       return gc_upto(av, gabs(r, prec));
     514             :     }
     515             :   }
     516           0 :   pari_err_BUG("genus2BSDperiod");
     517             :   return NULL; /* LCOV_EXCL_LINE */
     518             : }
     519             : 
     520             : GEN
     521         357 : hyperellperiods(GEN C, long flag, long prec)
     522             : {
     523         357 :   pari_sp av = avma;
     524             :   GEN M, H;
     525             :   long g;
     526         357 :   if (flag==2) return genus2BSDperiod(C, prec);
     527           7 :   H = check_hyperell(C);
     528           7 :   if (!H) pari_err_TYPE("hyperellperiods", C);
     529           7 :   if (flag<0 || flag>1) pari_err_FLAG("hyperellperiods");
     530           7 :   g = hyperellgenus(H); if (g < 1) pari_err_DOMAIN("hyperellperiods","genus","=",gen_0,C);
     531           0 :   M = periodmat(H, prec);
     532           0 :   if (flag==0) M = gauss(vecslice(M,1,g), vecslice(M,g+1,2*g));
     533           0 :   return gc_upto(av, M);
     534             : }

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